The former is deprecated by C++14. The standard says they are the same:

The header defines all types and macros the same as the C standard library
header<stdint.h>.
Signed-off-by: Rosen Penev <rosenp@gmail.com>

The former was deprecated with C++14.

According to the C++11 and C++17 standards, both files are identical.
Signed-off-by: Rosen Penev <rosenp@gmail.com>

Since we switched from autotools to Meson in commit
94592c14, we don't need to include
`config.h` early to properly enable large file support.  Meson passes
the required macros on the compiler command line instead of defining
them in `config.h`.

This means we can include `config.h` at any time, whenever we want to
check its macros, and there are no ordering constraints.

.. and move the plugins to src/encoder/plugins/.